The main terrorist is an idiot. He didn't see the broken glass! :-P

So, when the pilot goes down into the avionics room, gets the "fried" circuit from one of the SEALs, and comes back up, Nagi Hasan stops him from closing the hatch to look around a little himself. The camera shows a limited view of what's down there, but there is clearly broken glass on the floor of the avionics room, within Hasan's view. He totally missed that! What a moron! :-P