Aliens vs. Humanics and Tobias Shepherd turns cliche
Well ... every good sci-fi story needs conflict. But they didn't have to turn the general into your standard issue, cliched military blockhead. You know, that nails-for-breakfast dude we hated in Avatar? Even going back to E.T., the government / military always want to destroy and dissect anything "alien" to them. Paranoia on steroids.
The better way IMO was to have explored the peace negotiations route. At least give it a try. Then that bad untrusting alien and that warmongering bitch who wants her humanic army ready bypassing protocols blow the whole thing.
Now in re to Aliens vs. Humanics. Lucy appears to be a good sentient robot. She and the aliens would seem to be in common cause against the military industrial machine -- the true bad guys (as usual ) . If Lucy is sentient, she has the ability to overcome her programming. Thus, wouldn't all the uploaded copies be same? Might not the Humanics and Alien hybrids team up? That would be cool.