I believe the 10 days was to allow them to go into hidding. Grey isn't going to try to track them down, if he wanted them dead he would just kill them in the hospital.
He was asking if they would find something they could identify the bodies at the station, Emerson replies, they will find enough. I assume Grey figured they would try to stage their deaths, and he could now just go along with that story of them being dead.
Also, Grey changes his mind on killing Katherine after Emerson tells Grey that she saved his life and took a bullet for him. I believe after hearing this, Grey now believes she can be trusted.
Also, Grey's last words to Emerson was, I was never here. Basically saying this conversation never took place. Why would he explain this to him if he plans on hunting him down and killing him later. Grey was wanting to make sure they were on the same page.
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