Sidious and Dooku were aware of the creation of the Clone Army and had inhibitor chips placed in their brains.
Why was Dooku surprised that the Jedi had an army in Episode II?
Another problem with this movie, aside from being BORING as FUCK: the weird plotting.
You're right, we never even got to find out who this Syfo Dyas guy was.
I always assumed that they were just using Syfo Dyas' name to commission the building of the army and make it look like it was official business of the Jedi and Republic. I figure that any dead Jedi's name would have worked the same.
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