1 thing I didn't get: the mini-Ooze canister?
From what I remember The Shredder gets disarmed by Keno (the large canister which Perry takes), and Keno gets pushed by Raphael into the Shredder knocked out the 2nd mini canister which he threatened to douse a female. So how did he mutate unless he took some of the mutagen days before, which I doubt, so maybe he had a 3RD CANISTER hidden in his costume?