Actually, in the films the main theory thrown around the conference tables is impregnation via transmission (electrical or otherwise). That would explain the defined blackout areas where people lay unconscious for several hours. There were fatherless children in the first film too. It reminded me of Star Wars because Anakin/Darth Vader (who turned out to be a little blonde kid with mental powers via the Force...sound familiar?) supposedly didn't have a biological father either. It could also be that humanity didn't originate on Earth (Battlestar Galactica, Stargate, even Star Trek), and there's a division of humanity on another planet that has surpassed us in evolution while we were stuck in the Dark Ages. I don't think time travel is a suitable explanation, heck, even mutation or Evolutionary Jump Effect (EJE) are not suitable explanations in retrospect.
Sincerely,
Exchronos
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